YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27706444, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDNFTCNKT DGDNTDFRYF IYAVTYTVIL VPGLIGNILA LWVFYGYMKE TKRAVVFMIN  60
   61 LAIADLLQIL SLPLRIFYYL NHDWPFGPGL CMFCFYLKYV NMYASIYFLV CISVRRFWFL 120
  121 MYPFRFNDCK QKYDLYISIV GWLIICLACL LFPLLRTNDD TPGNRTKCFV DLPIRNVNLA 180
  181 QSVAMITIGE VVGFITPLMI VLYCTWKTAL SLQNKYPISQ HLGEKKKALR MILTCAAVFL 240
  241 ICFAPYHFSF PLDFLVKSNE IKSCLARRVI LIFHSVALCL ASLNSCLDPV IYYFTTNEFR 300
  301 RRLSRQELPD SIQLQTKSYK IVNNHGASPT AAELC

Type	Start	End	Confidence
Non-Cytoplasmic	1	21	0.96
Transmembrane Helix	22	45	0.91
Cytoplasmic	46	55	0.83
Transmembrane Helix	56	78	0.92
Non-Cytoplasmic	79	98	0.86
Transmembrane Helix	99	119	0.88
Cytoplasmic	120	134	0.91
Transmembrane Helix	135	155	0.96
Non-Cytoplasmic	156	185	0.92
Transmembrane Helix	186	206	0.94
Cytoplasmic	207	227	0.92
Transmembrane Helix	228	249	0.93
Non-Cytoplasmic	250	270	0.94
Transmembrane Helix	271	295	0.81
Cytoplasmic	296	335	0.88