YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27706452, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSNSTSTAE SNCNATNLTF QNSLYATTYI FIFIPGLLAN SAALWVLCRF ISKKNKAIIF  60
   61 MINLSVADLA HVLSLPLRIY YYINHHWPFQ RALCLLCFYL KYLNMYASIF FLTCISLQRC 120
  121 LFLLKPFRAR NWKRRYDVGI SAAVWIIVGT ACLPLPILRS AGLANNSESC FADLGLHDIS 180
  181 MASSIGMVTA AELGGFVLPV VIITYCTWKT RKSLQEFQDP PQNIKERKKA LRMVLMCAVV 240
  241 FIVCFTPYHL NFPFFMMVKQ RVFSNCSFIK STLYFHIISL CLANLNCCLD PVVYYFMTSE 300
  301 FRDQFSEHGN LVIQSCLRCK DSTLEIRQRK ENLQTISLEC LDVPTQCDEM AV

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.98
Transmembrane Helix	26	48	0.91
Cytoplasmic	49	57	0.87
Transmembrane Helix	58	80	0.91
Non-Cytoplasmic	81	101	0.88
Transmembrane Helix	102	123	0.86
Cytoplasmic	124	137	0.89
Transmembrane Helix	138	158	0.93
Non-Cytoplasmic	159	184	0.89
Transmembrane Helix	185	208	0.89
Cytoplasmic	209	229	0.97
Transmembrane Helix	230	250	0.93
Non-Cytoplasmic	251	272	0.91
Transmembrane Helix	273	296	0.76
Cytoplasmic	297	352	0.84