YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34881309, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSNSTSTVE SNCNAINVTF QNSLYATTYI FIFIPGLLAN SAALWVLFRF ISKKNKAIIF  60
   61 MINLSVADLA HILSLPLRIY YYINRHWPFQ RALCLLCFYL KYLNMYASIF FLTCISLQRC 120
  121 LFLLKPFRAR NWKRRYDVGI SAAVWIIVGT ACLPFPIMRS AGLANNTDSC FADLGYKQMD 180
  181 PLVLVTMITI AELAGFVIPV LTIACCTWKT TVSLKHPPIA FQGISERKKA LRMVFMCAAV 240
  241 FVICFTPYHI NFIFYTMVKE NIITSCPIVK SAMYFHPFSL CLASLCCLLD PILYYFMASE 300
  301 FRDQLSRHGS SVTRSRLMSR ESGSSMVS

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.98
Transmembrane Helix	26	48	0.91
Cytoplasmic	49	57	0.86
Transmembrane Helix	58	80	0.91
Non-Cytoplasmic	81	101	0.88
Transmembrane Helix	102	123	0.86
Cytoplasmic	124	137	0.89
Transmembrane Helix	138	158	0.93
Non-Cytoplasmic	159	187	0.89
Transmembrane Helix	188	210	0.90
Cytoplasmic	211	230	0.93
Transmembrane Helix	231	250	0.95
Non-Cytoplasmic	251	273	0.89
Transmembrane Helix	274	297	0.90
Cytoplasmic	298	328	0.98