YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34881307, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDRRFIDFQ FQDLNSSLRP RLGNATANNT CIVDDSFKYN LNGAVYSVVF ILGLITNSAS  60
   61 LFVFCFRMKM RSETAIFITN LALSDLLFVC TLPFKIFYNF NRHWPFGDTL CKISGTAFLT 120
  121 NIYGSMLFLT CISVDRFLAI VYPFRSRTIR TRRNSAIVCA GVWILVLSGG ISASLFSTTN 180
  181 VNNATTTCFE GFSKRVWKTY LSKITIFIEV VGFIIPLILN VSCSSVVLRT LRKPATLSQI 240
  241 GTNKKKVLKM ITVHMAVFVV CFVPYNSVLF LYALVRSQAI TNCLLERFAK IMYPITLCLA 300
  301 TLNCCFDPFI YYFTLESFQK SFYINTHIRM ESLFKTETPL TPKPSLPAIQ EEVSDQTTNN 360
  361 GGELMLESTF

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.96
Transmembrane Helix	44	66	0.92
Cytoplasmic	67	75	0.89
Transmembrane Helix	76	97	0.95
Non-Cytoplasmic	98	116	0.91
Transmembrane Helix	117	139	0.83
Cytoplasmic	140	154	0.85
Transmembrane Helix	155	176	0.92
Non-Cytoplasmic	177	205	0.94
Transmembrane Helix	206	230	0.86
Cytoplasmic	231	250	0.92
Transmembrane Helix	251	274	0.89
Non-Cytoplasmic	275	290	0.94
Transmembrane Helix	291	313	0.63
Cytoplasmic	314	370	0.67