YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149042257, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNASFKEASP FLLQMESAID WLGENVSWVP SIEDQSCNHT TQNGTNISSA EWGGPRGTVT  60
   61 KWLGGNPHIM AKIVLTFAYA VIIVISLFGN SLVCQVFVKH KETKKSTGLL IFNLAISDIL 120
  121 IILLNSPFAL ARFLSGQWVF GRIMCHVSRF AQYCSLHVST LTLMAVAMDR HRVILHPMKP 180
  181 RLTHSQSLFV VGVIWSIAVF LALPHAIYQN LFTLVNMDGD VRSYCLPSFP GPSTLVSKYV 240
  241 DLGTFILLYI LPLLVIVGTY SHLGKRLWIQ NAIGDASARQ LMAHYQKRKK SIRMLILIVL 300
  301 VFAVCWFPLN FYVVLISSAG VENDSVIFYA FHWFAMSSTC YNPFIYCWLN RSFRAKLRSI 360
  361 SSFRMQSLFV CSSSQVQQIQ PRESHELREL RTSSLLRVPL AVPEPQVFED PSLATGDNSQ 420
  421 VSVQGEWEDP DPSLDEEPGP STRDSYFCIH MQTSTH

Type	Start	End	Confidence
Non-Cytoplasmic	1	72	0.92
Transmembrane Helix	73	94	0.87
Cytoplasmic	95	108	0.79
Transmembrane Helix	109	131	0.91
Non-Cytoplasmic	132	148	0.86
Transmembrane Helix	149	168	0.89
Cytoplasmic	169	186	0.89
Transmembrane Helix	187	208	0.93
Non-Cytoplasmic	209	241	0.95
Transmembrane Helix	242	263	0.89
Cytoplasmic	264	293	0.94
Transmembrane Helix	294	316	0.89
Non-Cytoplasmic	317	328	0.86
Transmembrane Helix	329	349	0.95
Cytoplasmic	350	456	0.95