YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NPBW1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHNLSLFEPG RGNVSCGGPF LGCPNESNPA PLPLPQPLAV AVPVVYGVIC AVGLAGNSAV  60
   61 LYVLLRTPRM KTVTNVFILN LAIADELFTL VLPINIADFL LRRWPFGEVM CKLIVAVDQY 120
  121 NTFSSLYFLA VMSADRYLVV LATAESRRVS GRTYGAARAV SLAVWALVTL VVLPFAVFAR 180
  181 LDEEQGRRQC VLVFPQPEAF WWRASRLYTL VLGFAIPVST ICALYITLLC RLRAIQLDSH 240
  241 AKALDRAKKR VTLLVVAILA VCLLCWTPYH LSTIVALTTD LPQTPLVIGI SYFITSLSYA 300
  301 NSCLNPFLYA FLDDSFRRSL RQLVSCRTA

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.88
Transmembrane Helix	42	65	0.90
Cytoplasmic	66	75	0.84
Transmembrane Helix	76	97	0.85
Non-Cytoplasmic	98	122	0.79
Transmembrane Helix	123	140	0.81
Cytoplasmic	141	154	0.84
Transmembrane Helix	155	178	0.87
Non-Cytoplasmic	179	206	0.96
Transmembrane Helix	207	230	0.91
Cytoplasmic	231	250	0.94
Transmembrane Helix	251	270	0.97
Non-Cytoplasmic	271	287	0.87
Transmembrane Helix	288	312	0.86
Cytoplasmic	313	329	0.97