YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CD9_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVKGGSKCI KYLLFGFNFI FWLAGIAVLA IGLWLRFDSQ TKSIFEQETN HSSFYTGVYI  60
   61 LIGAGALMML VGFLGCCGAV QESQCMLGLF FGFLLVIFAI EIAAAVWGYT HKDEVIKELQ 120
  121 EFYKDTYQKL RNKDEPQRET LKAIHMALNC CGIAGGVEQF ISDICPKKQV LESFQVKSCP 180
  181 DAIDEVFHSK FHIIGAVGIG IAVVMIFGMI FSMILCCAIR RSREMV

Type	Start	End	Confidence
Cytoplasmic	1	11	0.95
Transmembrane Helix	12	35	0.90
Non-Cytoplasmic	36	54	0.94
Transmembrane Helix	55	77	0.91
Cytoplasmic	78	86	0.76
Transmembrane Helix	87	107	0.94
Non-Cytoplasmic	108	192	0.98
Transmembrane Helix	193	217	0.90
Cytoplasmic	218	226	0.89