YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MPRD_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPLSGCWRT ELLLLLLLAV AVRESWQIEE KSCDLVGEKD KESKNEVALL ERLRPLFNKS  60
   61 FESTVGQGSD TYSYIFRVCR EAGNHSSGAG LVQINKSNEK ETVVGRINET HIFNGSNWIM 120
  121 LIYKGGDEYD NHCGKEQRRA VVMISCNRHT LAGNFNPVSE ERGKIQDCFY LFEMDSSLAC 180
  181 SPEVSHLSVG SILLVIFASL VAVYIIGGFL YQRLVVGAKG MEQFPHLAFW QDLGNLVADG 240
  241 CDFVCRSKPR SVPAAYRGVG DDQLGEESEE RDDHLLPM

Type	Start	End	Confidence
Signal Peptide	1	25	0.96
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	188	0.99
Transmembrane Helix	189	211	0.87
Cytoplasmic	212	278	0.95