YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLP2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSERLSAP GCWLACTSFS RTKKGILLFA EIILCLVILI CFSASTSAYS SLSVIEMIFA  60
   61 AVLFVFYMCD LHSKISFINW PWTDFFRSLI AAILYLITSI VVLVEGRGSS KIVAGVLGLL 120
  121 ATLLFGYDAY ITFPLKQQRH TAAPTDPTDG P

Type	Start	End	Confidence
Cytoplasmic	1	24	0.96
Transmembrane Helix	25	46	0.90
Non-Cytoplasmic	47	51	0.67
Transmembrane Helix	52	71	0.85
Cytoplasmic	72	84	0.74
Transmembrane Helix	85	104	0.95
Non-Cytoplasmic	105	111	0.76
Transmembrane Helix	112	131	0.95
Cytoplasmic	132	151	0.87