YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82173983, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.96
Transmembrane Helix	45	64	0.90
Non-Cytoplasmic	65	73	0.77
Transmembrane Helix	74	92	0.92
Cytoplasmic	93	112	0.69
Transmembrane Helix	113	135	0.87
Non-Cytoplasmic	136	231	0.83
Transmembrane Helix	232	253	0.94
Cytoplasmic	254	261	0.75
Transmembrane Helix	262	284	0.91
Non-Cytoplasmic	285	316	0.82
Transmembrane Helix	317	335	0.86
Cytoplasmic	336	345	0.76
Transmembrane Helix	346	367	0.91
Non-Cytoplasmic	368	401	0.84
Transmembrane Helix	402	424	0.79
Cytoplasmic	425	445	0.92
Transmembrane Helix	446	470	0.90
Non-Cytoplasmic	471	477	0.86
Transmembrane Helix	478	500	0.93
Cytoplasmic	501	519	0.95
Transmembrane Helix	520	543	0.92
Non-Cytoplasmic	544	560	0.93
Transmembrane Helix	561	584	0.90
Cytoplasmic	585	640	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRLKCPSFF KCRQKEKVTA SSENFHVGEN DENQERGNWS KKSDYLLSMV GYAVGLGNVW  60
   61 RFPYLTYTNG GGAFLIPYAI MLALAGLPLF FLECSLGQFA SLGPVSVWRI LPLFQGVGIT 120
  121 MVLISIFVTI YYNVIIAYSL YYLFASFQSV LPWANCSSSW ADDNCSRQPI VTGCRVSTDT 180
  181 GGDMFMNISW VNSNNFTCLN GSEVFRPGQL PSEQYWDKVT LRRSSGMDET GVIVWYLALC 240
  241 LLLAWIIVGA ALFKGIKSSG KVVYFTALFP YVVLLILLIR GATLEGASKG ISYYIGAQSN 300
  301 FTKLREAEVW KDAATQIFYS LSVAWGGLVA LSSYNKFNNN CYSDAIIVCL TNCLTSVFAG 360
  361 FAIFSILGHM AHISGKEVSQ VVKSGFDLAF IAYPEALAQL PGGPFWSILF FFMLLTLGLD 420
  421 SQFASIETIT TTIQDLFPKA MKRMRVPITL GCCLILFLLG LVCVTQAGIY WVHLIDHFCA 480
  481 GWGILIAAIL EIAGIIWIYG GNRFIEDIEM MIGAKRWLFW LWWRACWFVI TPILLSAILV 540
  541 WSLVKFHRPN YADIPYPDWG VALGWCMIIF CIIWIPIMAI IKIVRAEGNI LQRIIKCCRP 600
  601 ASNWGPYLEK HRGERYKDMA EPAKETDHEI PTISGTRKPE