YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149036790, gi...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAPGFTASL VAGGVAGAAV DLILFPLDTI KTRLQSPQGF NQAGGFRGIY AGVPSAAIGS  60
   61 FPNAAAFFLT YEYVKSLLHT DSTSHFRPMK HMLAASTGEV VACLIRVPSE VVKQRAQVSA 120
  121 SSKTLQIFST ILSEEGIQGL YRGYKSTVLR EIPFSLVQFP LWESLKALWS WRRGRVVESW 180
  181 QSAVCGAFAG GFAAAVTTPL DVAKTRIMLA KAGSSTAVGN VLSAMHGVWR SQGLAG

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.57
Transmembrane Helix	6	27	0.77
Cytoplasmic	28	47	0.55
Transmembrane Helix	48	69	0.69
Non-Cytoplasmic	70	90	0.55
Transmembrane Helix	91	105	0.27
Cytoplasmic	106	178	0.63
Transmembrane Helix	179	200	0.80
Non-Cytoplasmic	201	206	0.61
Transmembrane Helix	207	229	0.70
Cytoplasmic	230	236	0.58