YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109472218, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.24
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALKAGRGA NWSLRAWRAL GGIFWRKGPL LAPDLRALLT SGTPDPQARM TYGTPSLPAR  60
   61 VPLGVLASRA NLTSGTPDLW VRLTVGTPGS SDQEDCGSPG SRRREWLAVA LGAGGAVLLL 120
  121 LWGWGRGPST VLAAVPAPPP TSPRSQYNFI ADVVEKTAPA VVYIEILDRH PFSGREVPIS 180
  181 NGSGFIVASD GLIVTNAHVV ADRRRVRVRL PSGDTYEAMV TAVDPVADIA TLRIQTKEPL 240
  241 PTLPLGRSAD VRQGEFVVAM GSPFALQNTI TSGIVSSAQR PARDLGLPQT NVEYIQTDAA 300
  301 IDFGNSGGPL VNLDGEVIGV NTMKVTAGIS FAIPSDRLRE FLHRGEKKNS WFGISGSQRR 360
  361 YIGVMMLTLT PSILAELQLR EPSFPDVQHG VLIHKVILGS PAHRAGLRPA DVILAIGEKM 420
  421 IQNAEDVYEA VRTQSQLAVR IRRGPETLTL YVTPEVTE

Type	Start	End	Confidence
Cytoplasmic	1	105	0.95
Transmembrane Helix	106	125	0.93
Non-Cytoplasmic	126	181	0.94
Transmembrane Helix	182	200	0.52
Cytoplasmic	201	360	0.52
Transmembrane Helix	361	375	0.24
Non-Cytoplasmic	376	458	0.70