YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149065222, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.91
Transmembrane Helix	5	25	0.87
Non-Cytoplasmic	26	33	0.69
Transmembrane Helix	34	52	0.90
Cytoplasmic	53	62	0.83
Transmembrane Helix	63	84	0.91
Non-Cytoplasmic	85	92	0.77
Transmembrane Helix	93	112	0.95
Cytoplasmic	113	120	0.82
Transmembrane Helix	121	139	0.96
Non-Cytoplasmic	140	155	0.87
Transmembrane Helix	156	180	0.86
Cytoplasmic	181	195	0.97
Transmembrane Helix	196	215	0.94
Non-Cytoplasmic	216	225	0.82
Transmembrane Helix	226	248	0.77
Cytoplasmic	249	250	0.62
Transmembrane Helix	251	275	0.73
Non-Cytoplasmic	276	292	0.65
Transmembrane Helix	293	314	0.89
Cytoplasmic	315	331	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPAFAVGLV FAGCCSNVIF LELLARTHPG CGNIVTFAQF LFIAVEGFLF EADLGRKPPA  60
   61 IPIRYYAIMV TMFFTVSVVN NYALNLNIAM PLHMIFRSGS LIANMILGII ILKKRYSMFK 120
  121 YTSIALVSAG IFICTFMSAK QVTVQSSLSD KDGFQAFAWW LLGIGALTFA LLMSARMGIF 180
  181 QETLYRQFGK HSKEALFYNH ALPLPGFIFL ASDIYDHVVL FNKSELYQVP VLGVTVPIMW 240
  241 FYLLMNVVTQ YVCIRGVFIL TTECSSLTVT LVVTLRKFVS LIFSILYFQN QFTLWHWLGT 300
  301 VFVFTGTLMY TEVWKNLGAT KSQLQKDDKK D