YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57012346, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLSRALILG VLALTTMLSP CGGQDDIEAD HVAAYGINMY QYYESRGQYT HEFDGDEEFY  60
   61 VDLDKKETIW RIPEFGQLTS FDPQGGLQEI ATAKYNLEIL MKSNSTPATN KVPEATVFSK 120
  121 SPVLLGQPNT LICFVDNIFP PAINITWLRN SKPVTEGTFE TSFLSNPDHS FHKMAYLTFI 180
  181 PSNDDIYDCK VEHWGLDEPV LKHWEPEIPA PMSELTETVV CALGLSVGLV GIVVGTIFII 240
  241 QGLRSGGPSR HPGPL

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	218	0.99
Transmembrane Helix	219	240	0.90
Cytoplasmic	241	255	0.86