YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTNA_RAT
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLEAIRYSP GSLQILDQLQ LPEHCHYETL SSVQQAREAI RAMKVRGAPA IALVGCLSLA  60
   61 VELQAGAGGP GLAALVAFVR DQLSLLVAAR PTAVNMARAA RDLTHMAARE AELEGATEET 120
  121 VRERVIRFAE DMLEKDLKDN RSIGDLGARH LLEQTNPRGG KVTVLTHCNT GALATAGYGT 180
  181 ALGVIRSLHE MGRLEHTFCT ETRPYNQGAR LTAFELVYEK IPATLITDSM AAAAMVHQGV 240
  241 SAVVVGADRV VANGDTANKI GTYQLAIVAK HHGIPFYVAA PSSSCDLRLE TGKEIVIEER 300
  301 PSQELTDLNG VRIAAQGIRV WNPAFDVTPH ELITGGIITE LGVFAPEELR AALSATIFSE 360
  361 GQTLDSPQM

Type	Start	End	Confidence
Cytoplasmic	1	46	0.63
Transmembrane Helix	47	66	0.55
Non-Cytoplasmic	67	369	0.82