YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TR134_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCSLRGCVQ GRGGKSGVSL SKFSPKKMSF FFIFMVIFCI QSLVALLQNG FLATVLGREW  60
   61 VRSQGLPAGD MIVACLAASR FCLHGVAIVN NFLTFVKLWS QKIYFSVLWD FVNTVNFWCT 120
  121 TWLAIFYCVK ISSFSHPIFF WIKWRISRSV PRLLLGSLVI GGLSAVSSAT GNTIAFQMTA 180
  181 CENYTLAYRT RAFYAYYFRC HAMLMWIIPF FLFLLSVILL MFSLYRHLEH MRYRRPWSHD 240
  241 YSTQAHTMAL KSLAFFLVFY TSYVLFLVIS VTRVVNVHSS WHWAWEVITY MGILLHSTIL 300
  301 TLSNPKMRKA LKIKFPDLCV ARSQDKRRG

Type	Start	End	Confidence
Cytoplasmic	1	29	0.51
Transmembrane Helix	30	52	0.90
Non-Cytoplasmic	53	113	0.53
Transmembrane Helix	114	134	0.75
Cytoplasmic	135	152	0.71
Transmembrane Helix	153	174	0.88
Non-Cytoplasmic	175	202	0.94
Transmembrane Helix	203	225	0.93
Cytoplasmic	226	251	0.87
Transmembrane Helix	252	272	0.88
Non-Cytoplasmic	273	281	0.81
Transmembrane Helix	282	303	0.90
Cytoplasmic	304	329	0.97