YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SIR5_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPLPVAPGR LFSQLCCGPK PSASPQSKIC LTMARPSSNM ADFRKCFANA KHIVIISGAG  60
   61 VSAESGVPTF RGTGGYWRKW QAQHLATPLA FAHNPSQVWE FYHYRREVMR NKEPNPGHLA 120
  121 IAQCEARLRD QGRRVVVITQ NIDELHRKAG TKNLLEIHGT LFKTRCTSCG NVAENYKSPI 180
  181 CPALLGKGAP EPDTQESRIP VHKLPRCEEA GCGGLLRPHV VWFGENLDPA ILKEVDRELA 240
  241 RCDLCLVVGT SSVVYPAAMF APQVASRGVP VAEFNMETTP ATNRFRFHFP GPCGVTLPEA 300
  301 LAPHETERIS

Type	Start	End	Confidence
Signal Peptide	1	25	0.53
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	310	0.98