YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMED9_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.85
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVRGVRVV GTSPGLLLGR GMRAFLLLLC LAARGGALYF HIGETEKKCF IEEIPDETMV  60
   61 IGNYRTQLYD KQREEYQPAT PGLGMFVEVK DPEDKVILAR QYGSEGRFTF TSHTPGEHQI 120
  121 CLHSNSTKFS LFAGGMLRVH LDIQVGEHAN DYAEIAAKDK LSELQLRVRQ LVEQVEQIQK 180
  181 EQNYQRWREE RFRQTSESTN QRVLWWSILQ TLILVAIGVW QMRHLKSFFE AKKLV

Type	Start	End	Confidence
Signal Peptide	1	37	0.85
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	202	0.97
Transmembrane Helix	203	222	0.93
Cytoplasmic	223	235	0.88