YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MUCEN_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLQVTALF FLLSNSLCRG ENSKALTETS TTKASATTPD MVSITNKSTG GTPPKGTTNS  60
   61 ATPKTPLMPA LDSPTTPKHE TTTRGVIKNE VSTIKTTVAN PTISNAVSTL SSPQNKTENQ 120
  121 SSIRTTEISG TNQLPDDQKP KTTETPSASL TTAKTISQIQ DTEDGKITAT TSTTPSYSSV 180
  181 ILPVVIALIV ITVLVFTLVG LYRICWKRDP GTPESGNDQP QSDKESVKLL TVKTISHESG 240
  241 EHSAQGKAKN

Type	Start	End	Confidence
Signal Peptide	1	20	0.97
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	179	0.99
Transmembrane Helix	180	202	0.91
Cytoplasmic	203	250	0.97