YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109467499, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEANTNVVIG TVCCSFVTFQ LLFHFISCWF SARVSLGYNS LSTEKKIEWN SRVVSTCHSM  60
   61 LVGIFGLYLF FFDEATIADP LWGDPSLVKI NISTASGYLI SDLLIILFNW KVIGDKFFII 120
  121 HHCAGLIAYY FVLKIGVLAY IANFRLLAEL SSPFVNQRWF FEVLKYPKFS KVNVINGILM 180
  181 TVVFFIVRII AIPPMYFYVY SVYGTEPYIR LGSVVHFVWI SSCIVLDVMN IMWMIKITKG 240
  241 CMKVISLIRQ EKAKDSLQNG KLD

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.72
Transmembrane Helix	7	30	0.85
Cytoplasmic	31	50	0.69
Transmembrane Helix	51	72	0.88
Non-Cytoplasmic	73	117	0.59
Transmembrane Helix	118	142	0.74
Cytoplasmic	143	171	0.78
Transmembrane Helix	172	192	0.90
Non-Cytoplasmic	193	212	0.80
Transmembrane Helix	213	234	0.89
Cytoplasmic	235	263	0.94