YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51948396, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSARAAPSRR RQAGRRLRYL STGSFPFLLL LLLLCIQLGG GQKKKENLLA EKVEQLMEWS  60
   61 SRRSIFRMNG DKFRKFVKAP PRNYSMIVMF TALQPQRQCS VCRQANEEYQ ILANSWRYSS 120
  121 AFCNKLFFGM VDYDEGTDVF QQLNMNSAPT FMHFPSKGRP KRADTFDLQR IGFAAEQLAK 180
  181 WIADRTDVHI RVFRPPNYSG TIALALLVSL VGGLLYLRRN NLEFIYNKTG WAMVSLCIVF 240
  241 AMTSGQMWNH IRGPPYAHKN PHNGQVSYIH GSSQAQFVAE SHIILVLNAA ITMGMVLLNE 300
  301 AATSKGDVGK RRIICLVGLG LVVFFFSFLL SIFRSKYHGY PYSFLIK

Type	Start	End	Confidence
Signal Peptide	1	41	0.96
N-region	1	32
H-region	33	38
C-region	39	41
Cleavage Site	41	42
Non-Cytoplasmic	42	197	0.99
Transmembrane Helix	198	217	0.95
Cytoplasmic	218	228	0.76
Transmembrane Helix	229	248	0.91
Non-Cytoplasmic	249	277	0.96
Transmembrane Helix	278	299	0.88
Cytoplasmic	300	312	0.84
Transmembrane Helix	313	333	0.96
Non-Cytoplasmic	334	347	0.94