YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109504203, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGNVSELLN ASQQAPGGGE EIRSRPSWLA STLAFILIFT IVVDILGNLL VILSVYRNKK  60
   61 LRNAGNIFVV SLAVADLVVA IYPFPLALTS ILNNGWNLGY LHCQVSAFLM GLSVIGSVFN 120
  121 ITGIAMNRYC YICHSLKYDR IYSNKNSLCY VFLIWTLTLI AIMPNLQTGT LQYDPRIYSC 180
  181 TFTQSVSSAY TIALVVFHFV VPMIIVTFCY LRIWILVLQV RRRVKPDSKP KLKPQDFRNF 240
  241 VTMFVVFVLF ALCWAPLNFI GLIVASDPAA MAPRIPEWLF VASYYLAYFN SCLNAIIYGL 300
  301 LNQNFRKEYK RIIISLCTAK MFFVDSSNDA ADKIKCKPSP LITNNNLIKV DSV

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.94
Transmembrane Helix	33	55	0.90
Cytoplasmic	56	64	0.87
Transmembrane Helix	65	86	0.92
Non-Cytoplasmic	87	104	0.83
Transmembrane Helix	105	126	0.90
Cytoplasmic	127	145	0.87
Transmembrane Helix	146	166	0.89
Non-Cytoplasmic	167	193	0.89
Transmembrane Helix	194	216	0.92
Cytoplasmic	217	238	0.93
Transmembrane Helix	239	263	0.87
Non-Cytoplasmic	264	280	0.91
Transmembrane Helix	281	301	0.93
Cytoplasmic	302	353	0.97