YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	P2Y13_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGTVNTTGM QGFNKSERCP RDTRMTQLLF PVLYTVVFFT GVLLNTLALW VFIHIPSNST  60
   61 FIIYLKNTLV ADLIMTLMLP FKILSDSRLA PWQLRGFVCT FSSVVFYETM YVGIMMLGLI 120
  121 AFDRFLKIVV PFRKTFVKKT AFAKIVSISI WLLMFLISLP NMILNKEATA STVKKCASLK 180
  181 SPLGLLWHQV VSHTCQFIFW TVFILMLLFY TVIAKKVYDS YRKFKSRDSK HKRLEAKVFI 240
  241 VMAVFFVCFA PFHFVRVPYT HSQTTNKTDC RLENQLFLAK ESTLFLATTN ICMDPLIYII 300
  301 LCKKFTRKVP CMRWRTKTAA SSDEHHSSQT DNITLS

Type	Start	End	Confidence
Cytoplasmic	1	29	0.57
Transmembrane Helix	30	53	0.90
Non-Cytoplasmic	54	103	0.61
Transmembrane Helix	104	122	0.87
Cytoplasmic	123	140	0.80
Transmembrane Helix	141	160	0.92
Non-Cytoplasmic	161	192	0.91
Transmembrane Helix	193	214	0.90
Cytoplasmic	215	233	0.94
Transmembrane Helix	234	255	0.92
Non-Cytoplasmic	256	283	0.96
Transmembrane Helix	284	305	0.64
Cytoplasmic	306	336	0.70