YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OXGR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIETLDSPAN DSDFLDYITA LENCTDEQIS FKMQYLPVIY SIIFLVGFPG NTVAISIYVF  60
   61 KMRPWKSSTI IMLNLALTDL LYLTSLPFLI HYYASGENWI FGDFMCKFIR FGFHFNLYSS 120
  121 ILFLTCFSLF RYIVIIHPMS CFSIQKTRWA VVACAGVWVI SLVAVMPMTF LITSTTRTNR 180
  181 SACLDLTSSD DLTTIKWYNL ILTATTFCLP LLIVTLCYTT IISTLTHGPR THSCFKQKAR 240
  241 RLTILLLLVF YVCFLPFHIL RVIRIESRLL SISCSIESHI HEAYIVSRPL AALNTFGNLL 300
  301 LYVVVSNNFQ QAFCSAVRCK AIGDLEQAKK DSCSNNP

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.97
Transmembrane Helix	38	60	0.92
Cytoplasmic	61	69	0.92
Transmembrane Helix	70	94	0.88
Non-Cytoplasmic	95	113	0.92
Transmembrane Helix	114	135	0.90
Cytoplasmic	136	148	0.88
Transmembrane Helix	149	171	0.90
Non-Cytoplasmic	172	199	0.95
Transmembrane Helix	200	222	0.91
Cytoplasmic	223	241	0.89
Transmembrane Helix	242	260	0.97
Non-Cytoplasmic	261	337	0.92