YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53801359, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVASATTAA PMSKAAAGDE LSGFFGLIPD LLEVANRSSN ASLQLQDLWW ELGLELPDGA  60
   61 APGHPPGSGG AESADTEARV RILISAVYWV VCALGLAGNL LVLYLMKSKQ GWRKSSINLF 120
  121 VTNLALTDFQ FVLTLPFWAV ENALDFKWPF GKAMCKIVSM VTSMNMYASV FFLTAMSVAR 180
  181 YHSVASALKS HRTRGHGRGD CCGQSLGESC CFSAKVLCGL IWASAAIASL PNVIFSTTIN 240
  241 VLGEELCLMH FPDKLLGWDR QFWLGLYHLQ KVLLGFLLPL SIISLCYLLL VRFISDRRVV 300
  301 GTTDGATAPG GSLSTAGARR RSKVTKSVTI VVLSFFLCWL PNQALTTWSI LIKFNVVPFS 360
  361 QEYFQCQVYA FPVSVCLAHS NSCLNPILYC LVRREFRKAL KNLLWRIASP SLTSMRPFTA 420
  421 TTKPEPEDHG LQALAPLNAT AEPDLIYYPP GVVVYSGGRY DLLPSSSAY

Type	Start	End	Confidence
Non-Cytoplasmic	1	85	0.80
Transmembrane Helix	86	106	0.93
Cytoplasmic	107	118	0.82
Transmembrane Helix	119	140	0.89
Non-Cytoplasmic	141	163	0.84
Transmembrane Helix	164	184	0.83
Cytoplasmic	185	215	0.88
Transmembrane Helix	216	235	0.81
Non-Cytoplasmic	236	271	0.85
Transmembrane Helix	272	291	0.96
Cytoplasmic	292	327	0.94
Transmembrane Helix	328	350	0.87
Non-Cytoplasmic	351	367	0.93
Transmembrane Helix	368	391	0.75
Cytoplasmic	392	469	0.79