YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OCLN_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVRPFESPP PYRPDEFKPN HYAPSNDMYG GEMHVRPMLS QPAYSFYPED EILHFYKWTS  60
   61 PPGVIRILSM LVIVMCIAVF ACVASTLAWD RAYGTGIFGG SMNYPYGSGF GSYGGGFGGY 120
  121 GYGYGYGYGG YTDPRAAKGF LLAMAAFCFI ASLVIFVTSV IRSGMSRTRR YYLIVIIVSA 180
  181 ILGIMVFIAT IVYIMGVNPT AQASGSMYGS QIYTICSQFY TPGGTGLYVD QYLYHYCVVD 240
  241 PQEAIAIVLG FMIIVAFALI IVFAVKTRRK MDRYDKSNIL WDKEHIYDEQ PPNVEEWVKN 300
  301 VSAGTQDMPP PPSDYAERVD SPMAYSSNGK VNGKRSYPDS LYKSPPLVPE VAQEIPLTLS 360
  361 VDDFRQPRYS SNDNLETPSK RTPTKGKAGK AKRTDPDHYE TDYTTGGESC DELEEDWLRE 420
  421 YPPITSDQQR QLYKRNFDAG LQEYKSLLAE LDEVNKELSR LDRELDDYRE ESEEYMAAAD 480
  481 EYNRLKQVKG SADYKSKKNY CKQLKSKLSH IKRMVGDYDR RKT

Type	Start	End	Confidence
Non-Cytoplasmic	1	63	0.63
Transmembrane Helix	64	89	0.87
Cytoplasmic	90	101	0.51
Transmembrane Helix	102	122	0.61
Non-Cytoplasmic	123	138	0.78
Transmembrane Helix	139	161	0.92
Cytoplasmic	162	170	0.83
Transmembrane Helix	171	195	0.92
Non-Cytoplasmic	196	243	0.90
Transmembrane Helix	244	265	0.95
Cytoplasmic	266	523	0.99