YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34863107, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRLFLPPLK ALMGSRNVGL LVPKAASRAQ CGGGSYGGRR PLRPGQYGTI TEVALQSGKG  60
   61 TVSLPSRAAE RAVGRWLLVC SGTVAGAVIL GGVTRLTESG LSMVDWHLIK EMKPPTSQEE 120
  121 WEAEFQKYQQ FPEFKILNHD MTLAEFKFIW YMEYSHRMWG RAVGLAYILP AAYFWRKGWL 180
  181 NRGMKGRVLA LCGLVCFQGL LGWYMVKSGL EEKPESYDIP RVSQYRLAAH LGSALILYCG 240
  241 SLWTSLSLLL PQHKIPETRQ LLWLRRFAGG TAGLVFLTAL SGAFVAGLDA GLVYNSFPKM 300
  301 GESWIPEDLL TFSPILKNVF ENPTMVQFDH RLLGVTSVTA ITMLYFLSRR IPLPRRTKMA 360
  361 AVTLLALAYA QVALGISTLL MYVPTPLAAT HQSGSLALLS GALWLMNELR RVPK

Type	Start	End	Confidence
Cytoplasmic	1	72	0.99
Transmembrane Helix	73	96	0.89
Non-Cytoplasmic	97	157	0.98
Transmembrane Helix	158	176	0.95
Cytoplasmic	177	185	0.85
Transmembrane Helix	186	206	0.92
Non-Cytoplasmic	207	226	0.96
Transmembrane Helix	227	250	0.89
Cytoplasmic	251	266	0.88
Transmembrane Helix	267	288	0.91
Non-Cytoplasmic	289	329	0.93
Transmembrane Helix	330	348	0.95
Cytoplasmic	349	359	0.86
Transmembrane Helix	360	381	0.93
Non-Cytoplasmic	382	387	0.81
Transmembrane Helix	388	407	0.93
Cytoplasmic	408	414	0.92