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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|157822073, gi...
Protein type: Transmembrane
Type Confidence: 0.60
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEMSANTML DSQRQQKHYG ITSPISLACP KEIDHIYTQK LIDAMKPFGV FEDEEELNHR  60
   61 LVVLGKLNNL VKEWISDISE SKNLPPSVVA TVGGKIFTFG SYRLGVHTKG ADIDALCVAP 120
  121 RHVERSDFFQ SFFEKLKHQD GVRNLRAVED AFVPVIKFEF DGIEIDLVFA RLAIQTISDN 180
  181 LDLRDDSRLR SLDIRCIRSL NGCRVTDEIL HLVPNKETFR LTLRAVKLWA KRRGIYSNML 240
  241 GFLGGVSWAM LVARTCQLYP NAAASTLVHK FFLVFSKWEW PNPVLLKQPE ESNLNLPVWD 300
  301 PRVNPSDRYH LMPIITPAYP QQNSTYNVST STRTVMVEEF KQGLAVTDEI LQGKSDWSKL 360
  361 LEPPNFFQKY RHYIVLTASA STEENHLEWV GLVESKIRVL VGNLERNEFI TLAHVNPQSF 420
  421 PGNKEHHKAN NYVSMWFLGI IFRRVENAES VNIDLTYDIQ SFTDTVYRQA NNINMLKDGM 480
  481 KIEATHVKKK QLHHYLPAEI LQKKKKSLSD VSRSSGGLQS KRSSLDSNCL DSSRDTDSGT 540
  541 PFNSPGSAHK PSNPDSPTGD AERSNAEPMA VIVEKLPSVP PAQGLSIPVI GAKGDAAVKA 600
  601 VSSPAVCTIP TVVGRSVIPR VTTPHNPVQG QPHLNGISNI TKNVTPKRSH SPPTDGTAKR 660
  661 LKDIEKFIRL ESAFKESRAA EDRKRKPMDA IGGESMPIPT IDTSRKKRLP SKELPDSSSP 720
  721 VPASNIRVIK NSIRLTLNR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle