YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SIGIR_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVCDRVPN FLSPSEDQAL GPALGSAVAL NCTAWVFSRP QCPQPSVQWL KDGLALGNGS  60
   61 HFSLHQDFWV SDNFSEIVSS VLVFNLTKAE DYGTFTCSAW NVSSHSFTLW RAGPAGHVAA 120
  121 VLASLLVLVV LLLVALLYVK CRLNVLLWYQ DTYGEVEMND GKLYDAYVSY SDRPEDRKFV 180
  181 NFILKPQLER RRGYKLFLED RDLLPRAEPS ADLLVNLSRC RRLIVVLSDA FLRRPWCSQS 240
  241 FREGLCRLLE LTRRPIFITF EGQRREPIHP ALRLLRQHRH LVTLLLWKPG SVTPSSDFWK 300
  301 ELQLALPRKV QYRPVEGDPQ TRLQDDKDPM LIVRGRAAQG RAMESELDPD PEGDLGVRGP 360
  361 VFGEPPTPLH ESKVSIGEGH ASEMDVSDLG SRNYSARTDF YCLVSEDDV

Type	Start	End	Confidence
Cytoplasmic	1	114	0.61
Transmembrane Helix	115	139	0.89
Non-Cytoplasmic	140	409	0.60