YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109500571, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPEQYDMD FYQSNYIIDN QEQSYNDSNA YGNFYGSRQP QAREQCQPSS PVPPEMFLSS  60
   61 DYGGQLFQPA SNLHYYSQSS SVDSFDEEPP LLEELGINFD HIWQKTLTVL NPMKPADGSI 120
  121 MNETDLTGPI LFCVALGATL LMAGKAQFGY IYGMSAIGCF GIHALLNLMS SSGVSYGCVA 180
  181 SVLGYCLLPM VILSSCAVFF SLQGTAGTMS ALLIITWCSL SASKIFISAL AMEGQQLLVA 240
  241 YPCALLYGLF ALLTVF

Type	Start	End	Confidence
Cytoplasmic	1	123	0.95
Transmembrane Helix	124	143	0.77
Non-Cytoplasmic	144	147	0.66
Transmembrane Helix	148	169	0.85
Cytoplasmic	170	175	0.62
Transmembrane Helix	176	201	0.82
Non-Cytoplasmic	202	205	0.56
Transmembrane Helix	206	227	0.85
Cytoplasmic	228	236	0.66
Transmembrane Helix	237	255	0.91
Non-Cytoplasmic	256	256	0.79