YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GP139_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHTHAHLAA NSSACGLGFV PVVYYSFLLC LGLPANILTV IILSQLVARR QKSSYNYLLA  60
   61 LAAADILVLF FIVFVDFLLE DFILTMQMPP IPDKIIEVLE FSSIHTSIWI TVPLTVDRYI 120
  121 AVCHPLKYHT VSYPARTRKV ILSVYITCFL TSIPYYWWPN IWTEDYISTS MHHVLVWIHC 180
  181 FTVYLVPCSI FFILNSIIVY KLRRKSNFRL RGYSTGKTTA ILFTITSIFA TLWAPRIIMI 240
  241 LYHLYGAPIQ NPWLVHIMLD VANMLALLNT AINFFLYCFI SKRFRTMAAA TLKALFKCQK 300
  301 QPVQFYTNHN FSITSSPWIS PANSHCIKML VYQYDKHGKP IKVSP

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.84
Transmembrane Helix	21	43	0.88
Cytoplasmic	44	54	0.74
Transmembrane Helix	55	79	0.88
Non-Cytoplasmic	80	100	0.86
Transmembrane Helix	101	121	0.79
Cytoplasmic	122	139	0.86
Transmembrane Helix	140	158	0.95
Non-Cytoplasmic	159	174	0.94
Transmembrane Helix	175	199	0.90
Cytoplasmic	200	218	0.89
Transmembrane Helix	219	240	0.90
Non-Cytoplasmic	241	256	0.86
Transmembrane Helix	257	280	0.88
Cytoplasmic	281	345	0.99