YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149068300, gi...
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNVFPELSI LRGDCIVSLA AAVLWGVCAM LQHCSLVLLL ASLWTTRHPV HGTVQVQDLS  60
   61 ISPCRIMGVA LVGRNADPQM NFTEAKEVCK VLGLTLASRN QVESAQKSGF ETCSYGWVGE 120
  121 RFSVIPRISP NPKCGKNGKG VLIWNASPSQ KFRVYCHNSS DTWANSCFPE ITTTFNTQTP 180
  181 AAEFSVSSDT YSASSSDSTT SASATTRAPP LTTMARKTKM ICITEVYTEP ITMDAETEAS 240
  241 VESGAAFKNE AAGFGGVPTT LLVLALFFFG AAAVLGVCYV KRYVKAFPFT NKNQQKEMIE 300
  301 TKVVKEEKAD DVNANEESKK MVKNSEEPKS PPKTTVRCLE AEV

Type	Start	End	Confidence
Cytoplasmic	1	15	0.48
Transmembrane Helix	16	32	0.53
Non-Cytoplasmic	33	258	0.89
Transmembrane Helix	259	280	0.80
Cytoplasmic	281	343	0.82