YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109498401, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.79
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVHRGARAG LLLPWGWVAL CLMSLLHLNN LTSVASENST QGVFPPVPTN ESTEESITSS  60
   61 IPGSTSHYYL IGQDSNKTTP AISETTVNFT ATPGTPSGSG TPHTFSQPQT YPTVTLPTTS 120
  121 DSTSTPEVEH STWNTSLPSV NVSDYSPNNV SSEMISTTEP CAHTSSSVPS IIKGDIKCSG 180
  181 IRGVPFTQGI CLELSEASSC EEFKKERGEE LMQILCKKEE TEADAGTSVC SLNLAQSEVR 240
  241 PECLLMVLAN STELSSKLQL MEKHQSDLRK LGIQSFNKQD LGSHQSYSRK TLIALVTSGV 300
  301 LLAILGTTGY FLMNRRSWSP TGERLGEDPY YTENGGGQGY SSGPGTSPET QGKANVTRGA 360
  361 QENGTGQATS RNGHSARQHV VADTEL

Type	Start	End	Confidence
Signal Peptide	1	35	0.78
N-region	1	26
H-region	27	32
C-region	33	35
Cleavage Site	35	36
Non-Cytoplasmic	36	291	0.99
Transmembrane Helix	292	313	0.92
Cytoplasmic	314	386	0.96