YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|166796821, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLETQMFQN AHSGSQWLLP PLTMLLLFAF ADRQTGDLLK AVVKRDPPWI QVLKDDTVTL  60
   61 TCEGTHNPGN SSTQWFHNQS STWGQVQASY TFKATVNDSG EYRCRMAHTS LSDPIHLEVI 120
  121 SDWLLLQTPQ LVFEEGETIT LRCHSWKNKQ LTKVLLFQNG KPVRYYYQSS NFSIPKANHS 180
  181 HSGNYYCKAY LGRTMHVSKP VTITVQGSAT ASTSSLVWFH AAFCLVMCLL FAVDTGLYFC 240
  241 VRRNLQTSGE DWRKSLSVGK YKAPQDK

Type	Start	End	Confidence
Signal Peptide	1	31	0.72
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	215	0.91
Transmembrane Helix	216	239	0.87
Cytoplasmic	240	267	0.85