YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34880876, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.54
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKVAIVGA GVSGLAAIRC CLEEGLEPIC FERSNDVGGL WKFSSHVEEG RASIYQSVFT  60
   61 NSSKEMMCFP DFPYPDDFPN YMHHSKLQEY IKSFAQKKDL LRYIQFETLV SSIKKCSSFL 120
  121 TTGQWVVVTE KDGKQESVLF DAVMICSGHH VYPNMPTDSF PGLEHFQGKC MHSRDYKGPG 180
  181 DFQGKKVLVI GLGNSASDIA VEVSRLATQV IISTRSGSWV MSRVWNDGYP WDMVYVTRFA 240
  241 SFLRNILPSF VSDWLYVKKM NTWFKHENYG LMPLNGPLRK EPVFNDELPA RILCGTVSIK 300
  301 PIVTKFTETS AVFEDGTVFE AIDCVIFATG YGYAYPFLED SIIKSRNNEV TLYKGIFPPQ 360
  361 LEKPTMAVIG LVQSLGAAIP TADLQARWAA KVFTNACVLP TTNEMMDDID EKMGKKLKWF 420
  421 GQSHTLQTDY ITYMDELSSF IGAKPNIPWL FVTDPQLALE VYFGPCSPYQ FRLMGPGKWD 480
  481 GARSAILTQW KRTVKPTRTR AVGEAQRPCH LYDLLQMLFF PVFFLAVLLT FY

Type	Start	End	Confidence
Signal Peptide	1	16	0.94
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	511	0.93
Transmembrane Helix	512	531	0.53
Cytoplasmic	532	532	0.41