YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIGC_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCAQHVADTS EVKWQKVLYE RQPFPDNYVD QRFLEELRKN IYARKYQYWA VVFESSVVIQ  60
   61 QLCSVCVFVV IWWYMDEGLL APQWLFGTGL ASSLVGYVLF DLIDGGDGRK KSGRTRWADL 120
  121 KSTLVFITFT YGFSPVLKTL TESVSTDTIY AMSVFMLLGH LIFFDYGANA AIVSSTLSLN 180
  181 MAIFASVCLA SRLPRSLHAF IMVTFAIQIF ALWPMLQKKL KAYTPRSYVG VTLLFAFSAF 240
  241 GGLLSISGVG AILFALLLFS ISCLCPYYLI HLQLFKENIH GPWDEAEIKE DLSRFLS

Type	Start	End	Confidence
Cytoplasmic	1	47	0.99
Transmembrane Helix	48	73	0.88
Non-Cytoplasmic	74	80	0.82
Transmembrane Helix	81	103	0.88
Cytoplasmic	104	119	0.87
Transmembrane Helix	120	137	0.86
Non-Cytoplasmic	138	147	0.62
Transmembrane Helix	148	164	0.82
Cytoplasmic	165	170	0.60
Transmembrane Helix	171	190	0.87
Non-Cytoplasmic	191	196	0.61
Transmembrane Helix	197	216	0.93
Cytoplasmic	217	226	0.68
Transmembrane Helix	227	246	0.86
Non-Cytoplasmic	247	250	0.60
Transmembrane Helix	251	270	0.89
Cytoplasmic	271	297	0.84