YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CTU1_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAPTCFSCH KARAALRRPR SGQALCGPCF CAAFEAEVLR TVLAGHLLPQ GAVVAVGASG  60
   61 GKDSTVLAHV LRELAPRLGI TLHLVAVDEG IGGYRDAALE AVRSQAARWE LPLTIVAYED 120
  121 LFGGWTMDAV ARSTAGSGRS RSCCTFCGVL RRRALEEGAR LVGATHIVTG HNADDMAETV 180
  181 LMNFLRGDAG RLARGGVLGS TGEGCALPRC RPLQFASQKE VVLYAHFRHL RYFSEECVYA 240
  241 PEAFRGHARD LLKLLEAARP SAVLDLVHSA ERLALAPAAK PPPPGTCSRC GALASNKLCQ 300
  301 ACALLDGLNR GLPRLAIGKG RRVLQVEPPP LGNPSRVTSD PVALPEPCTC KQSKDESNPC 360
  361 GNGGDRAGAT CVSKSDLSPV AE

Type	Start	End	Confidence
Signal Peptide	1	36	0.63
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	382	0.99