YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149056199, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.99
Transmembrane Helix	46	67	0.93
Non-Cytoplasmic	68	78	0.83
Transmembrane Helix	79	100	0.91
Cytoplasmic	101	118	0.77
Transmembrane Helix	119	141	0.85
Non-Cytoplasmic	142	163	0.82
Transmembrane Helix	164	182	0.93
Cytoplasmic	183	195	0.79
Transmembrane Helix	196	216	0.91
Non-Cytoplasmic	217	236	0.87
Transmembrane Helix	237	258	0.91
Cytoplasmic	259	273	0.89
Transmembrane Helix	274	296	0.89
Non-Cytoplasmic	297	320	0.92
Transmembrane Helix	321	342	0.88
Cytoplasmic	343	367	0.85
Transmembrane Helix	368	388	0.91
Non-Cytoplasmic	389	395	0.73
Transmembrane Helix	396	417	0.90
Cytoplasmic	418	427	0.88
Transmembrane Helix	428	449	0.91
Non-Cytoplasmic	450	453	0.85
Transmembrane Helix	454	475	0.93
Cytoplasmic	476	530	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRDSDMTGH IQQPGGRGNP SPAPSPSPGP GPGPGASERV ALKKEIGLVS ACTIIIGNII  60
   61 GSGIFISPKG VLEHSGSVGL ALFVWVLGGG VTALGSLCYA ELGVTIPKSG GDYAYVTEIF 120
  121 GGLAGFLLLW SAVLIMYPTS LAVISMTFSN YVLQPVFPNC IPPATASRVL SMACLMLLTW 180
  181 VNSSSVRWAT RIQVIFTGGK LLALSLIITV GFVQIFQGHF EELRPTNAFT FWMTPSVGHL 240
  241 ALAFLQGSFA FSGWNFLNYV TEELVDPRKN LPRAIFISIP LVTFVYTFTN VAYFTAMSPQ 300
  301 ELLSSNAVAV TFGEKLLGYF SWVMPVSVAL STFGGINGYL FTSSRLCFSG AREGHLPSFL 360
  361 AMIHVRRCTP IPALLVCCGA TAVIMLVGDT YTLINYVSFI NYLCYGVTIL GLLVLRWRRP 420
  421 ALHRPIKVNL LIPVVYLVFW AFLLVFSFIS EPMVCGVGII IILTGVPIFF LGVFWRSKPK 480
  481 CVHRFTESMT RWGQELCFVV YPQGSLEEEE NGPMGQPSPL PITDKPLKTQ