YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109460899, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METNYSIPMS GSEVMVNDST ISRVLWILTM VVLSITFVLG VLGNGLVIWV AGFRMAHTVT  60
   61 TTCYLNLALA DFFFTATLPF FIISTAMEGK WPFGWFLCKL LYIIADVNGI GSIFLITLIA 120
  121 LDRCICVVHP VWAQNHRTVS LARKVVIGPW IFGLILSLHI FIFISTYRVS GGDVYCVYYF 180
  181 PSWGNTDEEM LNTVFIFTTA LGIIKFIIIF IIPMSIVSIC YGLIAVKIQR RALVNSSRAS 240
  241 RVLKAVVASF FICWFPFQLV ALLSLVWFKE RLLNDEYKII DMLIMPTNSL AFFNSCLNPI 300
  301 LYVFFGQDFR KRLIHSLPSS LERALSEDSG QTSNTGTNSA LPSANIEMMS T

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.89
Transmembrane Helix	25	50	0.88
Cytoplasmic	51	62	0.75
Transmembrane Helix	63	83	0.92
Non-Cytoplasmic	84	101	0.78
Transmembrane Helix	102	125	0.80
Cytoplasmic	126	144	0.81
Transmembrane Helix	145	165	0.91
Non-Cytoplasmic	166	200	0.91
Transmembrane Helix	201	225	0.91
Cytoplasmic	226	244	0.90
Transmembrane Helix	245	267	0.90
Non-Cytoplasmic	268	283	0.92
Transmembrane Helix	284	306	0.84
Cytoplasmic	307	351	0.94