YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109460895, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEANYSVPLN VSEVVVYDST ISRVLWILSM VVLSITFVLG VLGNGLVIWV AGFRMVHTVT  60
   61 TTCYLNLALA DFSFTATLPF FVISTAMKEK WPFGWFLCKL VHIVVDINLF GSVFLIALIA 120
  121 LDRCICVLHP VWAQNHRTVS LARKVVVGPW ILALILTLPI FVFMTTVRVP GGNVYCTFNY 180
  181 ASWGKTVEEV LDVANTCETV RGTIRFVIGF TMPMSIVAIC YGLIAVKIHR RALVNSSRPL 240
  241 RVLTAVVVSF FICWFPFQLV ALLGTIWFKE LLFNTRYGIL KMWVNPTSSL AYFNSCLNPM 300
  301 LYVFMGQDFR ERLIHSLPSS LERALSEDCG QTSDTGTNSA LPPADIEIKA I

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.82
Transmembrane Helix	26	51	0.86
Cytoplasmic	52	62	0.69
Transmembrane Helix	63	83	0.86
Non-Cytoplasmic	84	102	0.78
Transmembrane Helix	103	126	0.79
Cytoplasmic	127	145	0.81
Transmembrane Helix	146	165	0.94
Non-Cytoplasmic	166	205	0.92
Transmembrane Helix	206	226	0.92
Cytoplasmic	227	241	0.87
Transmembrane Helix	242	266	0.86
Non-Cytoplasmic	267	287	0.85
Transmembrane Helix	288	306	0.78
Cytoplasmic	307	351	0.85