YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34854566, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTNMSAVNF MNMSGSTRSV SAGYIVLDIF SYLIFALTFV LGVLGNGLVI WVAGFRMKRT  60
   61 VTTISYLNLA IADFCFTSTL PFYIVSLVMG GIWPFGWFMC KFIYTVIDIN LFGSVFLIAL 120
  121 IALDRCVCVL HPVWAQNHRT VTLAKKVIIV PWICAFLLTL PVIIRVTTVP NRLGPGKTAC 180
  181 ALDFSPWTKD RAEKDKVAIT MYTVRGIIRF ILGFSTPMSI VAICYGLIAT KIHRQGLIKS 240
  241 SRPLRVLSFV VAAFFLCWCP FQVVGLIRTI QIREHLRNIP QSTLTAMKIT SSLAFFNSCL 300
  301 NPILYVFMGQ DFRQRLIHSL PASLERALSE DSAQTSDTGT NLGANSIPEN PANAM

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.66
Transmembrane Helix	32	55	0.89
Cytoplasmic	56	65	0.88
Transmembrane Helix	66	93	0.76
Non-Cytoplasmic	94	105	0.76
Transmembrane Helix	106	128	0.83
Cytoplasmic	129	146	0.82
Transmembrane Helix	147	166	0.93
Non-Cytoplasmic	167	206	0.95
Transmembrane Helix	207	229	0.92
Cytoplasmic	230	245	0.88
Transmembrane Helix	246	267	0.91
Non-Cytoplasmic	268	288	0.84
Transmembrane Helix	289	308	0.68
Cytoplasmic	309	355	0.71