YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34870080, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLNGLASA LESYRGRDRL IRTLGYGCQL IGGVLVEQCP SRSEVGRRLL VVSAQLSHCR  60
   61 TVLRLFDDLA MFVYTKQYGL GAEEEDVFIR WLSVLSNMAD QLYYPCEHVA WAADAKVLQV 120
  121 DSARWWTLST AFWSLSLLLG AVKSLWTMLK LRQKLRSPTG HFASQLPRSK WRAVEARIWS 180
  181 EALTLLSNLA DLANAVHWLP PGVLWAGCFP PWLVGLMGTI SSILSVYQAA RAGKQAEVDS 240
  241 P

Type	Start	End	Confidence
Non-Cytoplasmic	1	124	0.63
Transmembrane Helix	125	147	0.83
Cytoplasmic	148	177	0.76
Transmembrane Helix	178	198	0.69
Non-Cytoplasmic	199	207	0.62
Transmembrane Helix	208	227	0.89
Cytoplasmic	228	241	0.87