YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VKORL_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPVLLRVS VPRWERVARY AVCAAGILLS IYAYHVEREK ERDPEHRALC DLGPWVKCSA  60
   61 ALASRWGRGF GLLGSIFGKD GVLNQPNSVF GLIFYILQLL LGMTASAVAA LVLMTSSIVS 120
  121 VVGSLYLAYI LYFVLKEFCI ICVTTYVLNF LLLIINYKRL VYLNEAWKRQ LQPKED

Type	Start	End	Confidence
Cytoplasmic	1	16	0.67
Transmembrane Helix	17	36	0.82
Non-Cytoplasmic	37	88	0.46
Transmembrane Helix	89	105	0.68
Cytoplasmic	106	106	0.23
Transmembrane Helix	107	130	0.68
Non-Cytoplasmic	131	132	0.39
Transmembrane Helix	133	157	0.79
Cytoplasmic	158	176	0.69