YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TR120_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLVEWIVTI IMMTEFLLGN CANVFITIVN FIDCVKRRKI SSADRIITAI AIFRIGLLWA  60
   61 MLTNWHSHVF TPDTDNLQMR VFGGITWAIT NHFTTWLGTI LSMFYLFKIA NFSNSLFLHL 120
  121 KRKLDNVLLV IFLGSSLFLV AYLGMVNIKK IAWMSIHEGN VTTKSKLKHV TSITNMLLFS 180
  181 LINIVPFGIS LNCVLLLIYS LSKHLKNMKF YGKGCQDQST MVHIKALQTV VSFLLLYATY 240
  241 SSCVIISGWS LQNAPVFLFC VTIGSFYPAG HSCILIWGNQ KLKQVFLLLL RQMRC

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.87
Transmembrane Helix	8	32	0.81
Cytoplasmic	33	45	0.84
Transmembrane Helix	46	63	0.93
Non-Cytoplasmic	64	87	0.81
Transmembrane Helix	88	107	0.92
Cytoplasmic	108	126	0.85
Transmembrane Helix	127	146	0.96
Non-Cytoplasmic	147	178	0.94
Transmembrane Helix	179	201	0.91
Cytoplasmic	202	228	0.88
Transmembrane Helix	229	249	0.86
Non-Cytoplasmic	250	255	0.77
Transmembrane Helix	256	278	0.91
Cytoplasmic	279	295	0.95