YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TR123_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSQKINYSH LFTFSITLYV EIVTGILGHG FIALVNIMDW VKRRRISSVD QILTALALTR  60
   61 FIYVLSMLIC ILLFMLCPHL PRRSEMLSAM GIFWVVNSHF SIWLTTCLGV FYFLKIANFS 120
  121 NSFFLYLKWR VKKVILIIIL ASLIFLTLHI LSLGIYDQFS IAAYVGNMSY SLTDLTQFSS 180
  181 TFLFSNSSNV FLITNSSHVF LPINSLFMLI PFTVSLVAFL MLIFSLWKHH KKMQVNAKQP 240
  241 RDVSTMAHIK ALQTVFSFLL LYAIYLLFLI IGILNLGLME KIVILIFDHI SGAVFPISHS 300
  301 FVLILGNSKL RQASLSVLPC LRCQSKDMDT MGL

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.89
Transmembrane Helix	16	38	0.90
Cytoplasmic	39	55	0.88
Transmembrane Helix	56	80	0.85
Non-Cytoplasmic	81	94	0.80
Transmembrane Helix	95	114	0.90
Cytoplasmic	115	133	0.81
Transmembrane Helix	134	156	0.90
Non-Cytoplasmic	157	205	0.88
Transmembrane Helix	206	227	0.91
Cytoplasmic	228	253	0.85
Transmembrane Helix	254	274	0.91
Non-Cytoplasmic	275	284	0.68
Transmembrane Helix	285	306	0.90
Cytoplasmic	307	333	0.92