YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S39AA_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.93
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	405	0.99
Transmembrane Helix	406	430	0.91
Cytoplasmic	431	439	0.79
Transmembrane Helix	440	460	0.94
Non-Cytoplasmic	461	496	0.95
Transmembrane Helix	497	517	0.89
Cytoplasmic	518	686	0.95
Transmembrane Helix	687	710	0.76
Non-Cytoplasmic	711	732	0.59
Transmembrane Helix	733	754	0.91
Cytoplasmic	755	760	0.54
Transmembrane Helix	761	782	0.90
Non-Cytoplasmic	783	802	0.60
Transmembrane Helix	803	823	0.93
Cytoplasmic	824	833	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVHIHTKFC LICLLTFIFH HCNHCHEDHD HGPEELHRHH RGMTESESSK FSVQDAENEK  60
   61 KYYIEKLFDR YGENGRLSFF GLEKLLTNLG LGEIKVVEIN HEDLGHDHVS HLDILAVQEG 120
  121 KHFHSHTHQH FHNHLNAENH TTTSVTSKRN HKCDPEKEAA ELPIKADDKH LHDRNHRFHH 180
  181 RHRLHHHLDH NTTRHVHNDS VAHSEHGEPG HSPSPETNKT QEQSEVKSVK VRRKEKGKRK 240
  241 KENSEVNTPG FLPNHDHSEQ YEHNRVHKLD RVHSPGHPHA HLPEHSGHEL GHGHQELDPD 300
  301 NEGELRHTRK REAPHVRKSA IYSTPSHKDQ SEDDRQHECL NVTQLLKHFG LGPNSPISPD 360
  361 LFTYLCPALL YQIDSRLCIE HFDKLLVEDL NKDKTLVPED KTNIGASAWI CGIISITVIS 420
  421 LLSLLGVILV PIINQGCFKF LLTFLVALAV GTMSGDALLH LLPHSQGGHD HSHQHTHGHG 480
  481 HSHGHESKEF LEEYDAVLKG LVALGGIYLL FIIEHCIRMF KHYKQQRGKQ KWFMKQSTEE 540
  541 STIGRKLSDH KLNSTPDADW LQLKPLAGTD DSVVSEDRLN ETELTDLEAQ QESPPKNYLG 600
  601 VEEEKIMDHS HSDGLHTIHE HEVHVTSHNH HDEDKAVLRK HSHQWHHRHA HHSHGPCHSG 660
  661 SDLKETGIAN IAWMVIMGDG IHNFSDGLAI GAAFSAGLTG GISTSIAVFC HELPHELGDF 720
  721 AVLLKAGMTV KQAIVYNLLS AMMAYIGMLI GTAVGQYANN ITLWIFAITA GMFLYVALVD 780
  781 MLPEMLHGDG DHEEHGFCPV GQFILQNLGL LFGFAIMLVI ALYEDKIVFD IQF