YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40352886, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKSWLNFL VFLCGSAIGF FLCSQLLSIL LREEAAIQPN MLHNDPHARH SDDNGHSHLK  60
   61 GQMNFNADSS QHKDENIDVA ENLYQKVKIL CWVMTSPQNL EKKAKHVKAT WAQRCNKVLF 120
  121 MSSEENQDFP TVGLKTKEGR EQLYWKTIKA FQYVHDHYLE DADWFMKADD DTYVIVDNLR 180
  181 WLLSKYDPEQ PIYFGRRFKP YVKQGYMSGG AGYVLSKEAL RRFVNAFKTE KCTHSSSIED 240
  241 LALGRCMEII NVEAGDSRDT IGKETFHPFV PEHHLIKGYL PKTFWYWNYN YYPPIEGPGC 300
  301 CSDIAVSFHY VDGTTMYELE YLVYRLRPYG CLYRYQPALP ENILKEINQV NRKEDTKIKL 360
  361 GNP

Type	Start	End	Confidence
Signal Peptide	1	28	0.67
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	363	0.98