YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|627869, gi\|57...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCTRLVSMM AAAQAVEEMR TRVVLGEFGV RNVHTTDFPG NYAGYDDAWD QNRFEKNFRV  60
   61 GVVQMDEDTL EFDMVGIDAA IANAFRRILL ARVPTMAVEK VLVYNNTSIV QDEILAHRLG 120
  121 LIPILADPRL FEYRNQGEEE GTEIDTLQFR LQVRCTRNPN AAKDSSDPNE LYVNHKVYTR 180
  181 HMTWVPLGNQ ADVFPEGTIR PVHDDILIAQ LRPGQEIDLM MHCVKGIGKD HAKFSPVATA 240
  241 SYRLLPAITL LEPVEGEAAE ELSQCFSPGV IEVEEVQGKK VARVANARLD TFSREIFRHE 300
  301 KLKKAVRLAR VRDHYIFSVE STGVLPPDVL VSEAIKILMG KCRRFLDELD AVEMD

Type	Start	End	Confidence
Signal Peptide	1	15	0.51
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	355	0.99