YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|201083, gi\|73...
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVMALAGL PRRMTRWSQW AYAGRAQFCA VRRSVFGFSV RSGMVCRPRR CCSSTAETAA  60
   61 AKAEDDSFLQ WFLLLIPATA FGLGTWQVQR RKWKLKLIAE LESRVMAEPI PLPADPMELK 120
  121 NLEYRPVKVR GHFDHSKELY IMPRTMVDPV REARDAGRLS STESGAHVVT PFHCSDLGVT 180
  181 ILVNRGFVPR KKVNPETRQK GQVLGEVDLV GIVRLTENRK PFVPENSPER NHWYYRDLEA 240
  241 MAKITGADPI FIDADFHSTA PGGPIGGQTR VTLRNEHMQY ILTCRYGLCA ATSYLWFQKF 300
  301 VRRTPIM

Type	Start	End	Confidence
Non-Cytoplasmic	1	67	0.60
Transmembrane Helix	68	88	0.65
Cytoplasmic	89	307	0.48