YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14193666, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHQEPYSVQ ATAAIASAIT FLILFTIFGN ALVILAVLTS RSLRAPQNLF LVSLAAADIL  60
   61 VATLIIPFSL ANELLGYWYF WRAWCEVYLA LDVLFCTSSI VHLCAISLDR YWAVSRALEY 120
  121 NSKRTPRRIK CIILTVWLIA AVISLPPLIY KGDQRPEPHG LPQCELNQEA WYILASSIGS 180
  181 FFAPCLIMIL VYLRIYVIAK RSHCRGLGAK RGSGEGESKK PRPAAGGVPA SAKVPTLVSP 240
  241 LSSVGEANGH PKPPREKEEG ETPEDPEARA LPPNWSALPR SVQDQKKGTS GATAEKGAEE 300
  301 DEEEVEECEP QTLPASPASV FNPPLQQPQT SRVLATLRGQ VLLSKNVGVA SGQWWRRRTQ 360
  361 LSREKRFTFV LAVVIGVFVV CWFPFFFSYS LGAICPQHCK VPHGLFQFFF WIGYCNSSLN 420
  421 PVIYTIFNQD FRRAFRRILC RQWTQTGW

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.91
Transmembrane Helix	14	38	0.89
Cytoplasmic	39	48	0.88
Transmembrane Helix	49	71	0.92
Non-Cytoplasmic	72	87	0.91
Transmembrane Helix	88	108	0.93
Cytoplasmic	109	128	0.89
Transmembrane Helix	129	150	0.92
Non-Cytoplasmic	151	170	0.96
Transmembrane Helix	171	193	0.91
Cytoplasmic	194	366	0.98
Transmembrane Helix	367	387	0.97
Non-Cytoplasmic	388	407	0.88
Transmembrane Helix	408	428	0.93
Cytoplasmic	429	448	0.97